Studies

Application of CellNet to all reprogramming, directed differentiation, and direct conversion experiments published to date (n=56 as of June 21 2014), which had been profiled on platforms compatible with the CellNet training data.

Experiment Types

First authorSpeciesYearExperiment typeStarting cell typeTarget cell typeGEO IDPlatform namePlatform GEOPMID
Mikkelsen Mus musculus 2008 reprog fibroblast, b-cell iPS GSE10871 Affy430.2 GPL1261 18509334
Ho Mus musculus 2013 reprog fibroblast iPS GSE46532 Affy430.2 GPL1261 23791530
Fussner Mus musculus 2011 reprog fibroblast iPS GSE21595 MoGene1.0 GPL6246 21468033
Gao Mus musculus 2013 reprog fibroblast iPS GSE39637 MoGene1.0 GPL6246 23499384
Liao Mus musculus 2011 reprog fibroblast iPS GSE23104 MoGene1.0 GPL6246 21454525
Fluri Mus musculus 2012 reprog fibroblast iPS GSE35422 MoGene1.0 GPL6246 22447133
Serrano Mus musculus 2013 reprog fibroblast iPS GSE37548 MoGene1.0 GPL6246 23132827
Kang Mus musculus 2011 reprog fibroblast iPS GSE24046 MoGene1.0 GPL6246 21119684
Chen Mus musculus 2011 reprog fibroblast iPS GSE24930 MoGene1.0 GPL6246 21135873
Seo Mus musculus 2012 reprog fibroblast,hepatoblast, hepatocyte iPS GSE33110 Illumina MouseRef-8 v2.0 GPL6885 22378611
Pfaff Mus musculus 2012 reprog bone marrow, fibroblast iPS GSE29635 Illumina MouseRef-8 v2.0 GPL6885 21732815
JianXin Mus musculus 2011 reprog fibroblast iPS GSE28197 Illumina MouseRef-8 v2.0 GPL6885 21956995
Faustino Mus musculus 2008 DD ESC cardiomyocyte GSE6689 Affy430.2 GPL1261 18184438
Christoforou Mus musculus 2008 DD ESC cardiomyocyte GSE5671 Affy430.2 GPL1261 18246200
McKinney-Freeman Mus musculus 2012 DD ESC HSPC GSE37000 Affy430.2 GPL1261 23122293
Arnold Mus musculus 2013 DD ESC neuron GSE27114 Affy430.2 GPL1261 22964890
Soldati Mus musculus 2012 DD ESC NPC GSE34244 Illumina MouseRef-8 v2.0 GPL6885 22162260
Burney Mus musculus 2013 DD ESC NPC GSE46791 Illumina MouseRef-8 v2.0 GPL6885 23712654
Kim Mus musculus 2013 DD ESC NPC GSE37541 Illumina MouseRef-8 v2.0 GPL6885 23525019
Martinez-Fernandez Mus musculus 2013 DD ESC cardiomyocyte GSE43197 Affy430.2 GPL1261 24036272
Turbendian Mus musculus 2013 DD ESC cardiomyocyte GSE43831 Affy430.2 GPL1261 23487308
Zhou Mus musculus 2012 DC multipotent fibroblast 10T1_2 cardiomyocyte GSE27329 Affy430.2 GPL1261 23144723
Ieda Mus musculus 2010 DC cardiac fibroblast cardiomyocyte GSE22292 MoGene1.0 GPL6246 20691899
Addis Mus musculus 2013 DC fibroblast cardiomyocyte GSE45274 MoGene1.0 GPL6246 23591016
Christoforou Mus musculus 2013 DC fibroblast cardiomyocyte GSE44401 Affy430.2 GPL8321 23704920
Caiazzo Mus musculus 2011 DC fibroblast dopaminergic neurons GSE27174 MoGene1.0 GPL6246 21725324
Redecke Mus musculus 2013 DC bone marrow Hematopoietic progenitor GSE45759 Affy430.2 GPL1261 23749299
Bussman Mus musculus 2010 DC pre-b-cell C10 line macrophage GSE17316 Affy430.2 GPL1261 19896445
DeTullio Mus musculus 2011 DC pre-b-cell primary macrophage GSE32330 Affy430.2 GPL1261 21969581
Son Mus musculus 2011 DC fibroblast motor neuron GSE31160 Illumina MouseRef-8 v2.0 GPL6885 21852222
Marro Mus musculus 2011 DC fibroblast, hepatocyte neuron GSE30102 Illumina MouseRef-8 v2.0 GPL6885 21962918
Ring Mus musculus 2012 DC fibroblast NPC GSE37859 MoGene1.0 GPL6246 22683203
Han Mus musculus 2012 DC fibroblast NPC GSE30500 Illumina MouseRef-8 v2.0 GPL6885 22445517
Chin Homo sapiens 2013 reprog fibroblast iPS GSE26453 HG-U133_Plus_2 GPL570 22108792
Kim Homo sapiens 2009 reprog fibroblast iPS GSE16093 HG-U133_Plus_2 GPL570 19481515
Kim Homo sapiens 2011 reprog umbilical cord blood, keratinocyte iPS GSE27186 HG-U133_Plus_2 GPL570 22119740
Loewer Homo sapiens 2010 reprog fibroblasts iPS GSE23968 HG-U133_Plus_2 GPL570 21057500
Loh Homo sapiens 2010 reprog peripheral blood iPS GSE22167 HG-U133_Plus_2 GPL570 20621044
Ma Homo sapiens 2012 reprog fibroblast iPS GSE37258 HG-U133_Plus_2 GPL570 23019320
Maherali Homo sapiens 2011 reprog fibroblast, keratinocyte iPS GSE12390 HG-U133_Plus_2 GPL570 18786420
Park Homo sapiens 2008 reprog fibroblast iPS GSE9832 HG-U133_Plus_2 GPL570 18157115
Warren Homo sapiens 2010 reprog fibroblast iPS GSE23583 HG-U133_Plus_2 GPL570 20888316
Cheung Homo sapiens NA reprog fibroblast iPS GSE48761 HuGene-1_0-st GPL6244 24749076
Sun Homo sapiens 2012 DD iPS cardiomyocyte GSE35108 HuGene-1_0-st GPL6244 22517884
Uosaki Homo sapiens NA DD iPS cardiomyocyte GSE28191 HuGene-1_0-st GPL6244 NA
James Homo sapiens 2010 DD ESC endothelial GSE19735 HG-U133_Plus_2 GPL570 20081865
White Homo sapiens 2013 DD iPS, ESC endothelial GSE37631 HuGene-1_0-st GPL6244 23079999
Li Homo sapiens 2009 DD ESC fibroblast GSE9440 HG-U133_Plus_2 GPL570 19229866
DeLaForest Homo sapiens 2011 DD ESC hepatocyte GSE25417 HG-U133_Plus_2 GPL570 21852396
Si-Tayeb Homo sapiens 2010 DD iPS, ESC hepatocytes GSE14897 HG-U133_Plus_2 GPL570 19998274
Karlsson Homo sapiens 2008 DD ESC monocytes/macrophages GSE15791 HuGene-1_0-st GPL6244 18550257
Denis Homo sapiens 2011 DD ESC NPC/MSC GSE8590 HG-U133_Plus_2 GPL570 21142452
Nam Homo sapiens 2013 DC fibroblast cardiac fate GSE43588 HuGene-1_0-st GPL6244 23487791
Li Homo sapiens 2013 DC fibroblast endothelial GSE42672 HG-U133_Plus_2 GPL570 23520160
Szabo Homo sapiens 2010 DC fibroblast multilineage blood progenitors GSE24621 HuGene-1_0-st GPL6244 21057492
Zhu Homo sapiens 2014 DC, DD iPSC, fibroblast hepatocytes GSE52309 HuGene-1_0-st GPL6244 24572354

Experiment Types